Allon M. Klein: search on Z-Library

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1

Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells

Klein, Allon M., Mazutis, Linas, Akartuna, Ilke, Tallapragada, Naren, Veres, Adrian, Li, Victor, Peshkin, Leonid, Weitz, David A., Kirschner, Marc W.

Journal:

Year:

2015

Language:

english

File:

PDF, 4.61 MB

english, 2015

2

Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain

Raj, Bushra, Wagner, Daniel E, McKenna, Aaron, Pandey, Shristi, Klein, Allon M, Shendure, Jay, Gagnon, James A, Schier, Alexander F

Journal:

Nature Biotechnology

Year:

2018

Language:

english

File:

PDF, 6.37 MB

english, 2018

3

Lineage tracing meets single-cell omics: opportunities and challenges

Wagner, Daniel E., Klein, Allon M.

Journal:

Nature Reviews Genetics

Year:

2020

Language:

english

File:

PDF, 2.45 MB

english, 2020

4

A single type of progenitor cell maintains normal epidermis

Clayton, Elizabeth, Doupé, David P., Klein, Allon M., Winton, Douglas J., Simons, Benjamin D., Jones, Philip H.

Journal:

Year:

2007

Language:

english

File:

PDF, 795 KB

english, 2007

5

The Ordered Architecture of Murine Ear Epidermis Is Maintained by Progenitor Cells with Random Fate

David P. Doupé, Allon M. Klein, Benjamin D. Simons, Philip H. Jones

Journal:

Developmental Cell

Year:

2010

Language:

english

File:

PDF, 1.01 MB

english, 2010

6

Mouse Germ Line Stem Cells Undergo Rapid and Stochastic Turnover

Allon M. Klein, Toshinori Nakagawa, Rie Ichikawa, Shosei Yoshida, Benjamin D. Simons

Journal:

Year:

2010

Language:

english

File:

PDF, 1.30 MB

english, 2010

7

Single-cell barcoding and sequencing using droplet microfluidics

Zilionis, Rapolas, Nainys, Juozas, Veres, Adrian, Savova, Virginia, Zemmour, David, Klein, Allon M, Mazutis, Linas

Journal:

Nature Protocols

Year:

2016

Language:

english

File:

PDF, 2.12 MB

english, 2016

8

Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo

Wagner, Daniel E., Weinreb, Caleb, Collins, Zach M., Briggs, James A., Megason, Sean G., Klein, Allon M.

Journal:

Year:

2018

Language:

english

File:

PDF, 3.10 MB

english, 2018

9

The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution

Briggs, James A., Weinreb, Caleb, Wagner, Daniel E., Megason, Sean, Peshkin, Leonid, Kirschner, Marc W., Klein, Allon M.

Journal:

Year:

2018

Language:

english

File:

PDF, 6.99 MB

english, 2018

10

Technique to measure the expression dynamics of each gene in a single cell

Klein, Allon M.

Journal:

Year:

2018

Language:

english

File:

PDF, 522 KB

english, 2018

11

Lineage tracing on transcriptional landscapes links state to fate during differentiation

Weinreb, Caleb, Rodriguez-Fraticelli, Alejo, Camargo, Fernando D., Klein, Allon M.

Journal:

Year:

2020

Language:

english

File:

PDF, 3.82 MB

english, 2020

12

Lineage reconstruction from clonal correlations

Weinreb, Caleb, Klein, Allon M.

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

File:

PDF, 1.09 MB

2020

13

Ngn3+ endocrine progenitor cells control the fate and morphogenesis of pancreatic ductal epithelium

Judith Magenheim, Allon M. Klein, Ben Z. Stanger, Ruth Ashery-Padan, Beatriz Sosa-Pineda, Guoqiang Gu, Yuval Dor

Journal:

Developmental Biology

Year:

2011

Language:

english

File:

PDF, 2.37 MB

english, 2011

14

Intestinal Crypt Homeostasis Results from Neutral Competition between Symmetrically Dividing Lgr5 Stem Cells

Hugo J. Snippert, Laurens G. van der Flier, Toshiro Sato, Johan H. van Es, Maaike van den Born, Carla Kroon-Veenboer, Nick Barker, Allon M. Klein, Jacco van Rheenen, Benjamin D. Simons, Hans Clevers

Journal:

Year:

2010

Language:

english

File:

PDF, 1.88 MB

english, 2010

15

The Critical Discussion Group: Fostering Personal and Scientific Growth

Allon M. Klein, Laura Lande-Diner

Journal:

Year:

2011

Language:

english

File:

PDF, 176 KB

english, 2011

16

250 Characterisation of Squamous Oesophageal Epithelium and Location of Epithelial Stem Cells

Mariagnese Barbera, David P. Doupe, Allon M. Klein, Benjamin D. Simons, Philip H. Jones, Rebecca C. Fitzgerald

Journal:

Gastroenterology

Year:

2009

Language:

english

File:

PDF, 54 KB

english, 2009

17

Declined Presentation

Sun, Jianlong, Ramos, Azucena, Chapman, Brad, Le, Linda, Yu-Jui, Ho, Klein, Allon, Hofmann, Oliver, Camargo, Fernando

Journal:

Experimental Hematology

Year:

2014

Language:

english

File:

PDF, 64 KB

english, 2014

18

Clonal dynamics of native haematopoiesis

Sun, Jianlong, Ramos, Azucena, Chapman, Brad, Johnnidis, Jonathan B., Le, Linda, Ho, Yu-Jui, Klein, Allon, Hofmann, Oliver, Camargo, Fernando D.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.60 MB

english, 2014

19

Kinetics of cell division in epidermal maintenance

Klein, Allon M., Doupé, David P., Jones, Phillip H., Simons, Benjamin D.

Journal:

Physical Review E

Year:

2007

Language:

english

File:

PDF, 550 KB

english, 2007

20

Mechanism of murine epidermal maintenance: Cell division and the voter model

Klein, Allon M., Doupé, David P., Jones, Philip H., Simons, Benjamin D.

Journal:

Physical Review E

Year:

2008

Language:

english

File:

PDF, 664 KB

english, 2008

21

Behavioral, Pharmacological, and Immunological Abnormalities after Streptococcal Exposure: A Novel Rat Model of Sydenham Chorea and Related Neuropsychiatric Disorders

Brimberg, Lior, Benhar, Itai, Mascaro-Blanco, Adita, Alvarez, Kathy, Lotan, Dafna, Winter, Christine, Klein, Julia, Moses, Allon E, Somnier, Finn E, Leckman, James F, Swedo, Susan E, Cunningham, Madel

Journal:

Neuropsychopharmacology

Year:

2012

Language:

english

File:

PDF, 680 KB

english, 2012

22

On the Relationship of Protein and mRNA Dynamics in Vertebrate Embryonic Development

Peshkin, Leonid, Wühr, Martin, Pearl, Esther, Haas, Wilhelm, Freeman, Robert M., Gerhart, John C., Klein, Allon M., Horb, Marko, Gygi, Steven P., Kirschner, Marc W.

Journal:

Developmental Cell

Year:

2015

Language:

english

File:

PDF, 2.43 MB

english, 2015

23

Stochastic Fate of p53-Mutant Epidermal Progenitor Cells Is Tilted toward Proliferation by UV B during Preneoplasia

Allon M. Klein, Douglas E. Brash, Philip H. Jones, Benjamin D. Simons and Bert Vogelstein

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.29 MB

english, 2010

24

A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure

Baron, Maayan, Veres, Adrian, Wolock, Samuel L., Faust, Aubrey L., Gaujoux, Renaud, Vetere, Amedeo, Ryu, Jennifer Hyoje, Wagner, Bridget K., Shen-Orr, Shai S., Klein, Allon M., Melton, Douglas A., Yan

Journal:

Year:

2016

Language:

english

File:

PDF, 15.84 MB

english, 2016

25

Genetic screening enters the single-cell era

Wagner, Daniel E, Klein, Allon M

Journal:

Year:

2017

Language:

english

File:

PDF, 744 KB

english, 2017

26

In Vitro Reconstitution of Tissue Homeostasis and Stochastic Cell Fate Choice

Kawaguchi, Kyogo, Klein, Allon M.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 42 KB

english, 2017

27

InDrops and Drop-seq technologies for single-cell sequencing

Klein, Allon M., Macosko, Evan

Journal:

Year:

2017

Language:

english

File:

PDF, 1.18 MB

english, 2017

28

Clonal analysis of lineage fate in unperturbed hematopoiesis

Rodriguez-Fraticelli, Alejo, Wolock, Samuel, Weinreb, Caleb, Sun, Jialong, Klein, Allon, Camargo, Fernando

Journal:

Experimental Hematology

Year:

2017

Language:

english

File:

PDF, 184 KB

english, 2017

29

Proteomics of phosphorylation and protein dynamics during fertilization and meiotic exit in the Xenopus egg

Presler, Marc, Van Itallie, Elizabeth, Klein, Allon M., Kunz, Ryan, Coughlin, Margaret L., Peshkin, Leonid, Gygi, Steven P., Wühr, Martin, Kirschner, Marc W.

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 2.55 MB

english, 2017

30

Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex

Hrvatin, Sinisa, Hochbaum, Daniel R., Nagy, M. Aurel, Cicconet, Marcelo, Robertson, Keiramarie, Cheadle, Lucas, Zilionis, Rapolas, Ratner, Alex, Borges-Monroy, Rebeca, Klein, Allon M., Sabatini, Berna

Journal:

Nature Neuroscience

Year:

2017

Language:

english

File:

PDF, 5.19 MB

english, 2017

31

Clonal analysis of lineage fate in native haematopoiesis

Rodriguez-Fraticelli, Alejo E., Wolock, Samuel L., Weinreb, Caleb S., Panero, Riccardo, Patel, Sachin H., Jankovic, Maja, Sun, Jianlong, Calogero, Raffaele A., Klein, Allon M., Camargo, Fernando D.

Journal:

Year:

2018

Language:

english

File:

PDF, 7.77 MB

english, 2018

32

SPRING: a kinetic interface for visualizing high dimensional single-cell expression data

Weinreb, Caleb, Wolock, Samuel, Klein, Allon M

Journal:

Year:

2017

Language:

english

File:

PDF, 195 KB

english, 2017

33

Single-cell gene expression reveals a landscape of regulatory T cell phenotypes shaped by the TCR

Zemmour, David, Zilionis, Rapolas, Kiner, Evgeny, Klein, Allon M., Mathis, Diane, Benoist, Christophe

Journal:

Nature Immunology

Year:

2018

Language:

english

File:

PDF, 4.01 MB

english, 2018

34

Population snapshots predict early haematopoietic and erythroid hierarchies

Tusi, Betsabeh Khoramian, Wolock, Samuel L., Weinreb, Caleb, Hwang, Yung, Hidalgo, Daniel, Zilionis, Rapolas, Waisman, Ari, Huh, Jun R., Klein, Allon M., Socolovsky, Merav

Journal:

Year:

2018

Language:

english

File:

PDF, 7.99 MB

english, 2018

35

Fundamental limits on dynamic inference from single-cell snapshots

Weinreb, Caleb, Wolock, Samuel, Tusi, Betsabeh K., Socolovsky, Merav, Klein, Allon M.

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 3.71 MB

english, 2018

36

Publisher Correction: Single-cell gene expression reveals a landscape of regulatory T cell phenotypes shaped by the TCR

Zemmour, David, Zilionis, Rapolas, Kiner, Evgeny, Klein, Allon M, Mathis, Diane, Benoist, Christophe

Journal:

Nature Immunology

Year:

2018

File:

PDF, 502 KB

2018

37

Publisher Correction: Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex

Hrvatin, Sinisa, Hochbaum, Daniel R., Nagy, M. Aurel, Cicconet, Marcelo, Robertson, Keiramarie, Cheadle, Lucas, Zilionis, Rapolas, Ratner, Alex, Borges-Monroy, Rebeca, Klein, Allon M., Sabatini, Berna

Journal:

Nature Neuroscience

Year:

2018

Language:

english

File:

PDF, 527 KB

english, 2018

38

Mouse embryonic stem cells can differentiate via multiple paths to the same state

Briggs, James Alexander, Li, Victor C, Lee, Seungkyu, Woolf, Clifford J, Klein, Allon, Kirschner, Marc W

Journal:

Year:

2017

Language:

english

File:

PDF, 14.31 MB

english, 2017

39

A single-cell atlas of the airway epithelium reveals the CFTR-rich pulmonary ionocyte

Plasschaert, Lindsey W., Žilionis, Rapolas, Choo-Wing, Rayman, Savova, Virginia, Knehr, Judith, Roma, Guglielmo, Klein, Allon M., Jaffe, Aron B.

Journal:

Year:

2018

Language:

english

File:

PDF, 10.88 MB

english, 2018

40

Molecular diversification of regulatory T cells in nonlymphoid tissues

DiSpirito, Joanna R., Zemmour, David, Ramanan, Deepshika, Cho, Jun, Zilionis, Rapolas, Klein, Allon M., Benoist, Christophe, Mathis, Diane

Journal:

Science Immunology

Year:

2018

Language:

english

File:

PDF, 6.01 MB

english, 2018

41

Epidermal Tissue Adapts to Restrain Progenitors Carrying Clonal p53 Mutations

Murai, Kasumi, Skrupskelyte, Greta, Piedrafita, Gabriel, Hall, Michael, Kostiou, Vasiliki, Ong, Swee Hoe, Nagy, Tibor, Cagan, Alex, Goulding, David, Klein, Allon M., Hall, Benjamin A., Jones, Philip H

Journal:

Year:

2018

Language:

english

File:

PDF, 5.42 MB

english, 2018

42

Homeostatic Epidermal Stem Cell Self-Renewal Is Driven by Local Differentiation

Mesa, Kailin R., Kawaguchi, Kyogo, Cockburn, Katie, Gonzalez, David, Boucher, Jonathan, Xin, Tianchi, Klein, Allon M., Greco, Valentina

Journal:

Year:

2018

Language:

english

File:

PDF, 8.92 MB

english, 2018

43

Quantitative Clonal Analysis and Single-Cell Transcriptomics Reveal Division Kinetics, Hierarchy, and Fate of Oral Epithelial Progenitor Cells

Jones, Kyle B., Furukawa, Sachiko, Marangoni, Pauline, Ma, Hongfang, Pinkard, Henry, D’Urso, Rebecca, Zilionis, Rapolas, Klein, Allon M., Klein, Ophir D.

Journal:

Year:

2018

Language:

english

File:

PDF, 5.69 MB

english, 2018

44

Scrublet: Computational Identification of Cell Doublets in Single-Cell Transcriptomic Data

Wolock, Samuel L., Lopez, Romain, Klein, Allon M.

Journal:

Year:

2019

File:

PDF, 2.61 MB

2019

45

Scrublet: Computational Identification of Cell Doublets in Single-Cell Transcriptomic Data

Wolock, Samuel L., Lopez, Romain, Klein, Allon M.

Journal:

Year:

2019

Language:

english

File:

PDF, 2.61 MB

english, 2019

46

A comprehensive single cell transcriptional landscape of human hematopoietic progenitors

Pellin, Danilo, Loperfido, Mariana, Baricordi, Cristina, Wolock, Samuel L., Montepeloso, Annita, Weinberg, Olga K., Biffi, Alessandra, Klein, Allon M., Biasco, Luca

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 3.39 MB

english, 2019

47

Single cell analyses of development in the modern era

Klein, Allon M., Treutlein, Barbara

Journal:

Development (The Company of Biologists)

Year:

2019

Language:

english

File:

PDF, 132 KB

english, 2019

48

Mapping Distinct Bone Marrow Niche Populations and Their Differentiation Paths

Wolock, Samuel L., Krishnan, Indira, Tenen, Danielle E., Matkins, Victoria, Camacho, Virginia, Patel, Sweta, Agarwal, Puneet, Bhatia, Ravi, Tenen, Daniel G., Klein, Allon M., Welner, Robert S.

Journal:

Year:

2019

Language:

english

File:

PDF, 4.10 MB

english, 2019

49

Single cell analyses of development in the modern era

Klein, Allon M., Treutlein, Barbara

Journal:

Development (The Company of Biologists)

Year:

2019

File:

PDF, 132 KB

2019

50

Lineage commitment of hematopoietic stem cells and progenitors: insights from recent single cell and lineage tracing technologies

Loughran, Stephen, Haas, Simon, Wilkinson, Adam C., Klein, Allon, Brand, Marjorie

Journal:

Experimental Hematology

Year:

2020

File:

PDF, 539 KB

2020